How to Track Machine Learning Model Metrics in Your Projects

It is crucial to keep track of evaluation metrics for your machine learning models to:

“If you don’t measure it you can’t improve it.”

But what should you keep track of?

I have never found myself in a situation where I thought that I had logged too many metrics for my machine learning experiment.

Also, in a real-world project, the metrics you care about can change due to new discoveries or changing specifications, so logging more metrics can actually save you some time and trouble in the future.

Either way, my suggestion is:

“Log more metrics than you think you need.”

Ok, but how do you do that exactly?

Tracking metrics that are a single number

In many situations, you can assign a numerical value to the performance of your machine learning model. You can calculate the accuracy, AUC, or average precision on a held-out validation set and use it as your model evaluation metric.

In that case, you should keep track of all of those values for every single experiment run.

With Neptune you can easily do that:

neptune.log_metric('train_auc', train_auc)
neptune.log_metric('valid_auc', train_auc)
neptune.log_metric('valid_f1', train_auc)
neptune.log_metric('valid_accuracy', train_auc)

That said, sometimes, a single value is not enough to tell you if your model is doing well. 

This is where performance charts come into the picture.

Tracking metrics that are performance charts

To understand if your model has improved, you may want to take a look at a chart, confusion matrix, or distribution of predictions. 

Those, in my view, are still metrics because they help you measure the performance of your machine learning model.

With Neptune logging those charts is trivial:

neptune.log_image('diagnostics', 'confusion_matrix.png')
neptune.log_image('diagnostics', 'roc_auc.png')
neptune.log_image('diagnostics', 'prediction_dist.png')

import neptunecontrib.monitoring.metrics as npt_metrics

npt_metrics.log_binary_classification_metrics(y_test, y_test_pred)

Tracking iteration-level metrics (learning curves)

Most machine learning models converge iteratively. This is the case for deep learning models, gradient boosted trees, and many others.

You may want to keep track of evaluation metrics after each iteration both for the training and validation set to see whether your model to monitor overfitting.

Monitoring those learning curves is really simple to implement yet important habit.

For simple iteration-based training it can look like this:

for i in range(iterations):
   # training logic
   train_loss = loss(y_pred, y)
   neptune.log_metric('train_loss', train_loss)

And in the case of callback systems used for example in most deep learning frameworks:

class NeptuneLoggerCallback(Callback):
    ...
    def on_batch_end(self, batch, logs={}):
        for log_name, log_value in logs.items():
            neptune.log_metric(f'batch_{log_name}', log_value)

Tracking predictions after every epoch

Sometimes you may want to take a look at model predictions after every epoch or iteration. 

This is especially valuable when you are training image models that need a lot of time to converge. 

For example, in the case of image segmentation, you may want to plot predicted masks, true masks, and the original image after every epoch.

In Neptune you can use .log_image method to do that:

for epoch in epochs:
     …
     mask_preds = get_preds(model, images) 
     overlayed_preds = overlay( images, masks_true, masks_pred)
     neptune.log_image('network_predictions', overlayed_preds)

Tracking metrics after the training is done 

In some applications, you cannot keep track of all the important metrics in the training script. 

Moreover, in real-life machine learning projects, the scope of the project, and hence metrics you care about can change over time. 

In those cases, you will need to update experiment metrics or add new performance charts calculated when your training jobs are already finished. 

Luckily updating experiments is easy with Neptune:

exp = project.get_experiments(id='PROJ-421')[0]

exp.log_metric('test_auc'; 0.62)
exp.log_image('test_performance_charts', 'roc_curve_test.png')

Final thoughts

In this article we’ve learned:

Happy training!

Jakub Czakon

Mostly an ML person. Building MLOps tools, writing technical stuff, experimenting with ideas at Neptune.

• Follow me on